Preprocess bam file into a compressed alignment incidence matrix (equivalence class)

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

R/qtl2 module for QTL analysis, including genome scans

R/qtl2 module for treatment of genotypes (imputation, probability calculation, map estimation)

A place to collect papers that are related to deep learning and computational biology