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@trichelab

The Triche Lab

"If it breaks, you get to keep the pieces"

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  1. compartmap Public

    Forked from biobenkj/compartmap

    Chromatin compartment inference from ATACseq, RNAseq, and DNA methylation

    R 1 2

  2. trichelab.github.io Public

    Organization site on github.io (supposedly)

    JavaScript 8

  3. spiky Public

    R 2 6

  4. rehash Public

    idiotically simple translucent data sharing for Bioconductor data structures

    R

  5. chromophobe Public

    Forked from ttriche/chromophobe

    a package to handle ChromHMM (http://compbio.mit.edu/ChromHMM/) and similar segmentation models in R

    R

  6. cropcircle Public

    metabolomics imputation, factorization, manipulation

    R 1 1

Repositories

Showing 10 of 75 repositories
  • conumee2 Public Forked from hovestadtlab/conumee2

    spare copy of conumee2 in case it goes missing

    R 0 MIT 9 0 0 Updated Mar 20, 2025
  • methBlockR Public

    methylation blocks, to and fro

    R 0 0 0 0 Updated Mar 14, 2025
  • trichelab.github.io Public

    Organization site on github.io (supposedly)

    JavaScript 0 8 1 1 Updated Mar 5, 2025
  • MethylSeqR Public Forked from AmrR101/MethylSeqR

    R package for DNA methylation analysis on Direct Whole Methylome Sequencing (dWMS) data.

    R 0 2 0 0 Updated Feb 13, 2025
  • TidyLocalSynteny Public Forked from cxli233/TidyLocalSynteny

    A Tidyverse-based workflow for local synteny visualization (by CX Li)

    0 MIT 1 0 0 Updated Dec 12, 2024
  • singlet Public Forked from zdebruine/singlet

    Single-cell analysis with non-negative matrix factorization

    C++ 0 14 0 0 Updated Nov 27, 2024
  • FileSetExperiment Public

    A rectangular FileSet-backed object with rowData and colData

    R 0 0 0 0 Updated Oct 9, 2024
  • bamSliceR Public

    Slice and dice controlled-access BAMs for thousands of samples

    R 3 2 2 0 Updated Oct 8, 2024
  • nanoranger Public Forked from mehdiborji/nanoranger

    simplified cellranger for long-read data

    Python 0 MIT 5 0 0 Updated Jul 10, 2024
  • STAAR Public Forked from xihaoli/STAAR

    An R package for performing STAAR procedure in whole-genome sequencing studies

    C++ 0 GPL-3.0 44 0 0 Updated May 21, 2024