Personal Cancer Genome Reporter (PCGR)

A collection of small-sample, high-dimensional microarray data sets to assess machine-learning algorithms and models.

Provide R access to the NCI Genomic Data Commons portal.

Cancer Predisposition Sequencing Reporter (CPSR)

Explore the cancer relevance of your gene list

Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.

An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app

Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer

R package to work with ctDNA sequencing data

Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours

High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

four class intro to R: basic syntax, data manipulation, data viz

♋ 🆓 A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis

cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer

A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.

An interactive graphical illustration of genetic associations and their biological context

Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors

A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)

This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.