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@openworm

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.
README.md

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.

An overview of the core repositories in the project, along with the current status of automated testing, can be found here.

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  1. OpenWorm OpenWorm Public

    Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

    Python 2.8k 216

  2. openworm.github.io openworm.github.io Public

    OpenWorm main website

    HTML 25 35

  3. org.geppetto org.geppetto Public

    Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.

    Python 213 50

  4. c302 c302 Public

    The c302 framework for generating multiscale network models of C. elegans

    Python 116 22

  5. ChannelWorm2 ChannelWorm2 Public

    Tools and curated datasets to build quantitative models of C. elegans ion channels

    Jupyter Notebook 11 2

Repositories

Showing 10 of 104 repositories
  • CE_locomotion Public Forked from edizquierdo/CE_locomotion

    Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer

    openworm/CE_locomotion’s past year of commit activity
    C++ 1 3 7 0 Updated Mar 21, 2025
  • org.geppetto.datasources Public
    openworm/org.geppetto.datasources’s past year of commit activity
    Java 2 2 0 5 Updated Mar 21, 2025
  • NicolettiEtAl2024_MN_IN Public Forked from ModelDBRepository/2017403

    C.elegans motor and interneurons (Nicoletti at al. 2024)

    openworm/NicolettiEtAl2024_MN_IN’s past year of commit activity
    Python 0 3 4 1 Updated Mar 21, 2025
  • org.geppetto.core Public

    Geppetto core bundle

    openworm/org.geppetto.core’s past year of commit activity
    Java 23 11 6 7 Updated Mar 21, 2025
  • tracker-commons Public

    Compilation of information and code bases related to open-source trackers for C. elegans

    openworm/tracker-commons’s past year of commit activity
    Scala 12 12 28 (2 issues need help) 1 Updated Mar 20, 2025
  • openworm.ai Public

    Scripts related to use of LLMs and other AI technology in OpenWorm

    openworm/openworm.ai’s past year of commit activity
    HTML 0 MIT 0 2 1 Updated Mar 20, 2025
  • owmeta-core Public

    Core library for owmeta

    openworm/owmeta-core’s past year of commit activity
    Python 3 MIT 2 41 (1 issue needs help) 0 Updated Mar 18, 2025
  • NicolettiEtAl2019_NeuronModels Public Forked from ModelDBRepository/267187

    Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)

    openworm/NicolettiEtAl2019_NeuronModels’s past year of commit activity
    Jupyter Notebook 1 2 2 1 Updated Mar 10, 2025
  • simulate Public

    Links to online simulations of the worm

    openworm/simulate’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 7, 2025
  • OpenWorm Public

    Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

    openworm/OpenWorm’s past year of commit activity
    Python 2,751 MIT 216 41 5 Updated Mar 6, 2025
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