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Okinawa Institute of Science & Technology

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  1. Usiigaci Usiigaci Public

    Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

    Jupyter Notebook 195 68

  2. LaTeX-templates LaTeX-templates Public

    Graduate School LaTeX templates for Lab rotation proposal + report, OIST beamer and Thesis + thesis proposal

    63 57

  3. optinist optinist Public

    calcium imaging pipeline tool

    TypeScript 38 13

  4. DenseObjectDetection DenseObjectDetection Public

    Detection of objects in an image using segmentation

    Python 34 14

  5. DenseObjectAnnotation DenseObjectAnnotation Public

    Tool to annotate objects in images.

    JavaScript 19 8

  6. course-scheduler course-scheduler Public

    Python code to generate course schedules for the Graduate School

    Python 13 6

Repositories

Showing 10 of 169 repositories
  • NEXTNetR Public
    oist/NEXTNetR’s past year of commit activity
    C++ 0 GPL-3.0 0 0 0 Updated Mar 20, 2025
  • NEXTNet Public

    C++ implementation of the NEXT-Net algorithm for efficient simulation of epidemics on complex networks

    oist/NEXTNet’s past year of commit activity
    C++ 0 LGPL-3.0 0 0 0 Updated Mar 20, 2025
  • BioinfoUgrp Public

    OIST Bioinfo user group

    oist/BioinfoUgrp’s past year of commit activity
    Shell 7 2 1 0 Updated Mar 20, 2025
  • smartphone-robot-android Public

    Android development for smartphone-robot

    oist/smartphone-robot-android’s past year of commit activity
    Java 1 1 3 0 Updated Mar 19, 2025
  • emevo Public

    Simluate Embodied Evolution of Agents

    oist/emevo’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Mar 19, 2025
  • LuscombeU_Oikopleura_genome_assemblies Public

    List of github links for Oikopleura genome assemblies

    oist/LuscombeU_Oikopleura_genome_assemblies’s past year of commit activity
    1 0 0 0 Updated Mar 19, 2025
  • optinist Public

    calcium imaging pipeline tool

    oist/optinist’s past year of commit activity
    TypeScript 38 GPL-3.0 13 50 10 Updated Mar 18, 2025
  • VisualStimulation Public

    matlab gui for vstim with psychophysics toolbox

    oist/VisualStimulation’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Mar 17, 2025
  • nf-core_configs Public Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    oist/nf-core_configs’s past year of commit activity
    Nextflow 0 MIT 295 0 1 Updated Mar 14, 2025
  • LuscombeU_nfcore_pairgenomealign_fork Public Forked from nf-core/pairgenomealign

    Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results

    oist/LuscombeU_nfcore_pairgenomealign_fork’s past year of commit activity
    Nextflow 0 MIT 3 0 0 Updated Mar 12, 2025
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