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@labsyspharm

Laboratory of Systems Pharmacology @ Harvard

Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.

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  1. ashlar ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    Python 136 44

  2. mcmicro mcmicro Public

    Multiple-choice microscopy pipeline

    Nextflow 124 60

  3. scimap scimap Public

    Spatial Single-Cell Analysis Toolkit

    Python 86 29

  4. minerva-story minerva-story Public

    Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

    HTML 51 14

  5. cylinter cylinter Public

    An Interactive Image Segmentation Filter for Multiplex Microscopy

    Python 28 12

  6. minerva_analysis minerva_analysis Public

    JavaScript 26 7

Repositories

Showing 10 of 160 repositories
  • scimap Public

    Spatial Single-Cell Analysis Toolkit

    Python 86 MIT 29 42 2 Updated Mar 24, 2025
  • minerva-author Public

    Tool to create images and configuration files for Minerva-Story

    Python 16 MIT 15 19 1 Updated Mar 21, 2025
  • ome-tiff-pyramid-tools Public

    Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.

    Python 14 MIT 9 0 1 Updated Mar 21, 2025
  • ad-rna-editing Public
    R 0 1 0 0 Updated Mar 21, 2025
  • ad-personalized Public
    R 0 MIT 0 0 0 Updated Mar 19, 2025
  • minerva-author-ui Public

    Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.

    JavaScript 4 MIT 5 2 4 Updated Mar 17, 2025
  • peripheral-neuropathy Public
    0 0 0 0 Updated Mar 12, 2025
  • mcmicro Public

    Multiple-choice microscopy pipeline

    Nextflow 124 MIT 60 58 2 Updated Mar 4, 2025
  • basic-illumination Public

    ImageJ BaSiC shading correction for use with Ashlar

    Python 8 MIT 10 2 0 Updated Mar 4, 2025
  • mcreport Public

    Pathology report tool for mcmicro

    Python 0 MIT 0 0 0 Updated Mar 2, 2025
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