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@epiverse-trace

Epiverse-TRACE

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  1. sivirep sivirep Public

    Data Wrangling and Automated Reports from 'SIVIGILA' source

    R 42 4

  2. epiparameter epiparameter Public

    R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

    R 34 12

  3. serofoi serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    R 19 4

  4. vaccineff vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    R 15 4

  5. cfr cfr Public

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    R 13 4

  6. epiCo epiCo Public

    R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

    R 11 2

Repositories

Showing 10 of 61 repositories
  • serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    epiverse-trace/serofoi’s past year of commit activity
    R 19 4 17 2 Updated Mar 21, 2025
  • cleanepi Public

    R package to clean and standardize epidemiological data

    epiverse-trace/cleanepi’s past year of commit activity
    R 8 3 16 4 Updated Mar 21, 2025
  • epidemics Public

    A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

    epiverse-trace/epidemics’s past year of commit activity
    R 8 4 19 (1 issue needs help) 3 Updated Mar 21, 2025
  • etdashboard Public

    Developer dashboard for a universe overview of Epiverse-TRACE packages

    epiverse-trace/etdashboard’s past year of commit activity
    R 1 0 0 0 Updated Mar 21, 2025
  • tutorials Public
    epiverse-trace/tutorials’s past year of commit activity
    R 3 4 38 (3 issues need help) 1 Updated Mar 20, 2025
  • tutorials-early Public

    Tutorials to learn reading, cleaning and validating case data, and converting line list data to incidence for visualizing epidemic curves.

    epiverse-trace/tutorials-early’s past year of commit activity
    R 2 3 37 5 Updated Mar 20, 2025
  • epiverse-trace.github.io Public

    Technical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally

    epiverse-trace/epiverse-trace.github.io’s past year of commit activity
    R 2 3 10 (1 issue needs help) 5 Updated Mar 20, 2025
  • epiverse Public

    Meta-package for the Epiverse-TRACE R packages

    epiverse-trace/epiverse’s past year of commit activity
    R 1 0 2 1 Updated Mar 20, 2025
  • .github Public
    epiverse-trace/.github’s past year of commit activity
    1 MIT 1 5 1 Updated Mar 20, 2025
  • simulist Public

    An R package for simulating line lists

    epiverse-trace/simulist’s past year of commit activity
    R 8 1 8 2 Updated Mar 19, 2025
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