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@berenslab

Berens Lab @ University of Tübingen

Department of Data Science at the Hertie Institute for AI in Brain Health, University of Tübingen

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  1. rna-seq-tsne rna-seq-tsne Public

    The art of using t-SNE for single-cell transcriptomics

    Jupyter Notebook 122 34

  2. t-simcne t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    Python 115 12

  3. pubmed-landscape pubmed-landscape Public

    The landscape of biomedical research

    Jupyter Notebook 113 11

  4. neural_data_science neural_data_science Public

    Contains programming labs and lecture notes for the lecture "Neural Data Science"

    Jupyter Notebook 102 25

  5. uneye uneye Public

    Deep neural network for eye movement detection

    Jupyter Notebook 76 31

  6. contrastive-ne contrastive-ne Public

    Contrastive neighbor embeddings

    Jupyter Notebook 53 6

Repositories

Showing 10 of 73 repositories
  • ephyspy Public

    A Python package for electrophysiological feature extraction for patch-clamp experiments.

    berenslab/ephyspy’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 1 7 0 Updated Mar 19, 2025
  • AIMS2025-NeuroSimInf Public

    Course repository for Simulation and Inference for Neuroscience

    berenslab/AIMS2025-NeuroSimInf’s past year of commit activity
    Jupyter Notebook 0 4 1 0 Updated Mar 19, 2025
  • fundus_image_toolbox Public

    A Python package for fundus image processing.

    berenslab/fundus_image_toolbox’s past year of commit activity
    Jupyter Notebook 7 MIT 1 0 0 Updated Mar 18, 2025
  • hh_sbi Public
    berenslab/hh_sbi’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Mar 18, 2025
  • Learning-Disease-State Public Forked from GustavKS/Learning-Disease-State

    Learning Disease State from Noisy Ordinal Disease Progression Labels

    berenslab/Learning-Disease-State’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated Mar 14, 2025
  • iclr-dataset Public

    ICLR dataset

    berenslab/iclr-dataset’s past year of commit activity
    Jupyter Notebook 23 5 1 0 Updated Mar 14, 2025
  • disentangling-retinal-images Public

    This repository contains the code for the paper "Disentangling representations of retinal images with generative models".

    berenslab/disentangling-retinal-images’s past year of commit activity
    Python 0 0 0 0 Updated Mar 7, 2025
  • retimgtools Public

    Web-based tools for retinal image annotation and evaluation.

    berenslab/retimgtools’s past year of commit activity
    Python 1 0 0 0 Updated Mar 7, 2025
  • contrastive-ne Public

    Contrastive neighbor embeddings

    berenslab/contrastive-ne’s past year of commit activity
    Jupyter Notebook 53 MIT 6 1 0 Updated Mar 6, 2025
  • retinal-rl Public

    Testing theories about retinal coding in reinforcement learning environments

    berenslab/retinal-rl’s past year of commit activity
    Python 0 AGPL-3.0 1 24 3 Updated Feb 26, 2025
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