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@bcgsc

BC Cancer Canada's Michael Smith Genome Sciences Centre

Sequencing Centre for Genomics and Bioinformatics Research

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  1. RNA-Bloom RNA-Bloom Public

    🌺 reference-free transcriptome assembly for short and long reads

    Java 103 7

  2. LongStitch LongStitch Public

    Correct and scaffold assemblies using long reads

    Makefile 50 7

  3. ntRoot ntRoot Public

    🌳 Human ancestry inference from genomic data

    Python 6

  4. btllib btllib Public

    Bioinformatics Technology Lab common code library

    C++ 25 6

  5. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 66 9

  6. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 39 2

Repositories

Showing 10 of 118 repositories
  • pori_python Public
    bcgsc/pori_python’s past year of commit activity
    Python 0 GPL-3.0 1 1 4 Updated Mar 21, 2025
  • pori_ipr_client Public

    Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI

    bcgsc/pori_ipr_client’s past year of commit activity
    TypeScript 8 GPL-3.0 1 0 5 Updated Mar 21, 2025
  • pori_ipr_api Public

    Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform

    bcgsc/pori_ipr_api’s past year of commit activity
    JavaScript 8 0 0 7 Updated Mar 20, 2025
  • btl Public

    🔬 Bioinformatics Technology Lab, Genome Sciences Centre

    bcgsc/btl’s past year of commit activity
    HTML 1 3 4 0 Updated Mar 20, 2025
  • pori_graphkb_api Public

    REST API for the GraphKB project

    bcgsc/pori_graphkb_api’s past year of commit activity
    JavaScript 4 GPL-3.0 1 6 0 Updated Mar 19, 2025
  • triAMPh Public

    TaRget Identification of AntiMicrobial Peptides with Heterogenious graph attention networks

    bcgsc/triAMPh’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 19, 2025
  • pori_graphkb_loader Public

    The Loaders for GraphKB. Imports content from external sources via the GraphKB REST API

    bcgsc/pori_graphkb_loader’s past year of commit activity
    JavaScript 6 GPL-3.0 4 12 2 Updated Mar 18, 2025
  • abyss Public

    🔬 Assemble large genomes using short reads

    bcgsc/abyss’s past year of commit activity
    C++ 317 110 6 0 Updated Mar 17, 2025
  • unikseq Public

    🧬 Unique (& conserved) DNA sequence identification

    bcgsc/unikseq’s past year of commit activity
    Perl 11 GPL-3.0 1 0 0 Updated Mar 12, 2025
  • NanoSim Public

    Nanopore sequence read simulator

    bcgsc/NanoSim’s past year of commit activity
    Python 264 59 32 (6 issues need help) 2 Updated Mar 2, 2025
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