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@armbrustlab

Armbrust Lab

Biological Oceanography Lab at the University of Washington

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  1. SEAStAR SEAStAR Public

    SEAStAR is a package of tools supporting the construction of complete analysis pipelines for next-generation (Illumina®, SOLiD™) sequencing data generated from environmental samples.

    C 13 2

  2. seaflowviz2 seaflowviz2 Public

    SeaFlow realtime data dashboard with Meteor

    JavaScript 3

  3. cytDiv cytDiv Public

    cytoDiv is a R function that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices e…

    R 2 2

  4. armbrustlab.github.io armbrustlab.github.io Public

    HTML 2 5

  5. seaflow-realtime-deployment seaflow-realtime-deployment Public

    Shell 2

  6. trophic-mode-ml trophic-mode-ml Public

    Accompanying code for 'The dynamic trophic architecture of open-ocean protist communities revealed through machine-guided metatranscriptomics.'

    HTML 2

Repositories

Showing 10 of 23 repositories
  • r2rreader Public

    Download and parse R2R data files

    Python 0 MIT 0 0 0 Updated Mar 4, 2025
  • NPac_euk_gene_catalog Public

    North Pacific eukaryotic metatranscriptome assemblies and annotations

    Shell 2 MIT 0 0 0 Updated Mar 4, 2025
  • armbrustlab.github.io Public
    HTML 2 MIT 5 0 0 Updated Feb 10, 2025
  • marferret Public

    Code repository for collection, ingestion, and processing of genomic and transcriptomic sequence data into a reproducible reference sequence database

    Python 2 MIT 0 0 0 Updated Feb 29, 2024
  • seaflow-transfer Public

    SeaFlow data transfer tool

    Go 1 MIT 0 1 2 Updated Mar 7, 2023
  • Thaps_Catl Public
    R 0 0 0 0 Updated Jun 24, 2022
  • trophic-mode-ml Public

    Accompanying code for 'The dynamic trophic architecture of open-ocean protist communities revealed through machine-guided metatranscriptomics.'

    HTML 2 MIT 0 0 0 Updated Feb 18, 2022
  • seaflow-realtime-deployment Public
    Shell 2 GPL-3.0 0 0 0 Updated Sep 7, 2021
  • cruisereplay Public

    Replay historical data feeds for a research cruise

    Go 0 MIT 0 0 0 Updated Jul 13, 2021
  • diel_eukaryotes Public

    Code repository for 'Diel-regulated transcriptional cascades of microbial eukaryotes in the North Pacific Subtropical Gyre'

    Shell 0 GPL-3.0 0 0 0 Updated Jul 2, 2021
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