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WrightonLabCSU

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  1. DRAM Public

    Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

    Python 269 54

  2. join_asvbins Public

    Python 2

  3. columbia_river Public

    GitHub Repository of code used for the publication titled: Genome-resolved metaproteomics decodes the microbial and viral contributions to coupled carbon and nitrogen cycling in river sediments

    Python 1

  4. JGI-API-Request Public

    Python script is designed to fetch and process genomic data from the Joint Genome Institute (JGI) API, allowing users to request file downloads programmatically based on given taxon IDs.

    Python 4 1

Repositories

Showing 10 of 14 repositories
  • DRAM Public

    Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

    Python 269 GPL-3.0 54 115 (2 issues need help) 1 Updated Feb 26, 2025
  • dram-viz Public

    A library for visualizing the output of DRAM v2

    Python 1 MIT 0 2 0 Updated Feb 25, 2025
  • catechin_incubations Public
    R 0 GPL-3.0 0 0 0 Updated Nov 7, 2024
  • JGI-API-Request Public

    Python script is designed to fetch and process genomic data from the Joint Genome Institute (JGI) API, allowing users to request file downloads programmatically based on given taxon IDs.

    Python 4 1 0 0 Updated Jul 2, 2024
  • Protpipeliner Public

    This script combines MUSCLE, GBLOCKS, Prottest and RaxML for an efficient and streamlined method of building trees.

    Python 1 0 0 0 Updated May 14, 2024
  • CAMPER Public

    This is a repository for CAMPER.

    Python 12 GPL-3.0 0 2 0 Updated Mar 18, 2024
  • stordalen_polyphenols_paper Public
    HTML 0 0 0 0 Updated Feb 23, 2024
  • AD_CERC Public
    0 0 0 0 Updated Sep 19, 2023
  • kb_DRAM Public

    A Kbase app for DRAM

    Python 1 MIT 1 3 0 Updated Jun 24, 2023
  • prodigal-recoding Public Forked from hyattpd/Prodigal

    Fork of Prodigal Gene Prediction Software to introduce recoding of stop codons

    C 0 GPL-3.0 87 0 0 Updated Apr 1, 2023
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