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@PavlidisLab

Pavlidis lab

The Pavlidis Lab at the University of British Columbia

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  1. neuroexpresso neuroexpresso Public

    📊 Gene expression in neuroexpresso database

    R 18 1

  2. Gemma Gemma Public

    Genomics data re-analysis

    Java 23 6

  3. markerGeneProfile markerGeneProfile Public

    Marker gene profile estimation method used in NeuroExpresso manuscript

    R 14 2

Repositories

Showing 10 of 66 repositories
  • rnaseq-pipeline Public

    RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

    PavlidisLab/rnaseq-pipeline’s past year of commit activity
    Shell 22 Unlicense 4 30 1 Updated Mar 18, 2025
  • bioluigi Public

    Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines

    PavlidisLab/bioluigi’s past year of commit activity
    Python 9 Apache-2.0 0 6 1 Updated Mar 18, 2025
  • Gemma Public

    Genomics data re-analysis

    PavlidisLab/Gemma’s past year of commit activity
    Java 23 Apache-2.0 6 320 31 Updated Mar 17, 2025
  • TR_aggregation Public

    Contains the code for "Characterizing the targets of transcription regulators by aggregating ChIP-seq and perturbation expression data sets"

    PavlidisLab/TR_aggregation’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 15, 2025
  • aggregate_microglia Public

    This project looks to aggregate single cell coexpression patterns for microglial datasets

    PavlidisLab/aggregate_microglia’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 14, 2025
  • TR_singlecell Public

    This repo contains the code for my paper on reproducible TR coexpression patterns using single cell RNA-seq

    PavlidisLab/TR_singlecell’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 14, 2025
  • Unibind_analysis Public

    Leveraging data from the Unibind database.

    PavlidisLab/Unibind_analysis’s past year of commit activity
    R 0 0 1 0 Updated Mar 14, 2025
  • TGEMO Public

    The Gemma Ontology

    PavlidisLab/TGEMO’s past year of commit activity
    Python 1 1 3 1 Updated Mar 14, 2025
  • GemBrow Public

    The Gemma Browser

    PavlidisLab/GemBrow’s past year of commit activity
    Vue 4 Apache-2.0 1 27 1 Updated Mar 13, 2025
  • baseCode Public

    Data structures, math and statistics tools, and utilities that are often needed across projects.

    PavlidisLab/baseCode’s past year of commit activity
    Java 5 Apache-2.0 0 3 2 Updated Mar 3, 2025
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