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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.
README.md

About

A distributed national bioinformatics infrastructure supporting life sciences in Sweden

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  1. MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 241 82

  2. EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 15

  3. development-guidelines Public

    Development guidlines for software within NBIS.

    18 9

  4. excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 221 106

  5. GAAS Public

    Genome Assembly and Annotation Service code

    Perl 209 47

  6. IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 319 repositories
  • sda-cli Public

    User command line interface for the SDA

    Go 5 AGPL-3.0 1 50 2 Updated Mar 24, 2025
  • data-submission-documentation Public

    Documentation for data submissions from life science research in public repositories

    Python 3 0 0 1 Updated Mar 24, 2025
  • workshop-ngsintro Public

    Workshop • Intro to Bioinformatics using NGS data • 5 days

    HTML 14 GPL-3.0 7 0 0 Updated Mar 24, 2025
  • vector-oligo-search Public
    Python 0 GPL-3.0 1 1 2 Updated Mar 22, 2025
  • workshop-data-visualization-r Public

    Materials for NBIS workshop on data visulalization

    HTML 2 GPL-3.0 3 2 0 Updated Mar 21, 2025
  • scQC Public

    Single cell QC analysis pipeline

    HTML 1 GPL-3.0 0 0 0 Updated Mar 21, 2025
  • PLUPP-sv-mock-server Public

    A mock server to improve development experience for SV apps

    JavaScript 1 0 0 0 Updated Mar 21, 2025
  • workshop-scRNAseq Public

    Single cell RNA sequencing analysis course

    HTML 205 102 3 0 Updated Mar 20, 2025
  • workshop-reproducible-research Public

    NBIS/Elixir course: Tools for Reproducible Research

    HTML 64 CC-BY-4.0 32 6 0 Updated Mar 20, 2025
  • module-BYOD-dm-practices Public Forked from NBISweden/module-versioning-dm-practices
    Ruby 0 1 0 0 Updated Mar 20, 2025
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